June 2018: Front row, Duan Tianlin, Maria Guerrina, Eva Hodková. Second row: Chen Jun, Martin Lascoux, Sylvain Glémin. Third row: Nathalie Zeballos, Chen Chen, Luis Leal, Marion Orsucci, Dmytro Kryvokhyzha, Bogoljub Trickovic. Last row: Pascal Milesi
I am a professor of population genetics at the Evolutionary Biology Centre, Uppsala University. Over a period of five years (2009-2014) I have shared my time between Uppsala and Shanghai where I worked at the Chinese Academy of Sciences (PICB, together with Li Haipeng) and at Fudan University (together with David Waxman).
I primarily work on plant species, and more specifically on forest trees (spruces, birches, larches, poplars) and weeds (Capsella bursa-pastoris and its relatives). I have been working on an array of issues revolving around the interaction of the different evolutionary forces, in particular the interplay between demography and selection in shaping genetic diversity. Lately I have been especially interested in question related to the genetic basis of local adaptation. When addressing evolutionary questions we are using an array of techniques, including genomics, growth chamber experiments and field experiments. Although not a theoretical population geneticist myself I have been collaborating closely with some of them over the years.
I’m a research director at the French CNRS and was a visiting researcher at EBC during four years. I am now back in France but still associated to the group. My works concern theoretical population genetics and evolutionary genomics. I use population genetics modeling and sequence data analyses approaches, mainly in plant species. My current research topics are:
– The evolution of mating systems and their genomic consequences
– The evolution of GC content in plants and the role of GC-biased gene conversion
– The genetic and genomic of plant domestication
– The consequences of life-history traits on molecular evolution
Arriving in July 2020. Zebin will work on the evolution of polyploidy using Capsella bursa-pastoris as an experimental system.
After working on the population demographic history of Picea schrenkiana during my Master at Lanzhou University, I continue to study spruce species, but I now mainly focus on the population genetic structure and local adaptation of boreal spruce species. Intraspecific latitudinal clines in genotypes and phenotypes are widely interpreted as basic evidence for natural selection and adaptation to local environment. Two parallel latitudinal clines in gene expression and allele frequency have been detected in Norway spruce (Picea abies) and Siberian spruce (Picea obovata). However, the coverage of high latitude populations was insufficient in the previous study of Picea obovata. So we added samples from populations higher higher latitudes, to test for clinal variation.
Luis is currently studying Nordic birch populations in order to map their adaptive response in the face of global climate change. Over 50 different birch species can be found along the Eurasian continent, often living in sympatry, their evolutionary histories interwoven by common selective forces and recurrent hybridization and introgression events. We will be looking into three birch species present in Sweden – silver, downy, and dwarf – and use genomic data collected along a latitudinal cline to investigate the roles played by hybridization, selection, and population demographic history in shaping local adaptation.
Before joining Martin’s group, Luis worked with Niclas Backström at the Department of Ecology and Genetics, Uppsala University, where he used gene expression profiling to identify genes and pathways underpinning diapause regulation in wood-white butterflies.
Tianlin is a second year PhD student working on gene expression pattern in neopolyploids Capsella. During her first years she created a series of neopolyploids and she is currently carrying the RNASEQ part of the project. She is also working on the origin of the tetraploid C. bursa-pastoris, and in particular try to tell apart multiple origins from secondary contact.
Sandra Petrone, 2015. Do mating system and ploidy level affect the sensitivity to competition in Capsella species?
Xuyue Yang, 2016. The effect of mating system, ploidy level and range expansion on the sensitivity to competition in Capsella species
Mimmi Eriksson, 2017 (at Göteborg University): Characterizing the genetic load in Capsella bursa-pastoris across its range.
Tianlin Duan, 2018. How independently can the two genomes of an allotetraploid species evolve? The case of the shepherd’s purse (C. bursa-pastoris)
Chen Chen, 2019. Clinal variation in two spruce species
Visiting and project students:
Ning Weixuan: University of Oulu, June-July 2016.
Johanna Girodolle: 2d year student at SupAgro, Montpellier France, Sept 2016-Dec 2016.
Clémence Monot: 2d year student at ENSAIA, Nancy France, March 2017-June 2017.
Tianlin Duan: Project student, Uppsala University, March 2017-July 2017.
Margaux Jullien: PhD student, Université de Montpellier, France, Sept 2017-December 2017.
Eva Hodková: PhD student, Czech University of Life Sciences Prague, Czech Republic, April 2018-September 2018.
Johanna Hansen: Project student, Uppsala University, March 2018-July 2018
Chen Chen: Project student, Uppsala University, April 2018-August 2018
Bogoljub Trickovic: MEME student, Montepllier, March 2018-July 2018
Nathalie Zeballos: 2d year student at SupAgro, Montpellier France, May 2018-August 2018.
Jun Chen, Zhejiang University
Antoine Kremer, INRAE, Bordeaux
Jianquan Liu, Sichuan University
Vladimir Semerikov, Russian Academy of Sciences, Ekaterinburg
Giovanni G Vendramin, CNR, Florence
Pascal Milesi. Postdoc, Now Assistant Professor, Dpt of Ecology and Genetics, Uppsala University and SciLife Lab.
Marion Orsucci, Postdoc. Now postdoctoral fellow with Adrien Sicard, SLU, Uppsala
Maria Guerrina, Postdoc. Now Postdoc at the University of Genoa Italy.
Jun Chen, Postdoc Currently a reseacher at the Swedish University of Agricultural Sciences. We are still currently working jointly on tests of the nearly neutral theory and on the analysis of a large genomic dataset in Norway spruce. Jun will move to Zhejiang University, Hangzhou in April 2019.
Dmytro Kryvokhyzha, PhD student. Currently a Postdoc at IMBIM, Uppsala University. Still ongoing work with us on his last manuscripts.
Amandine Cornille, Postdoc, currently CR2 at CNRS, Paris.
Michael Stocks, PhD student, currently postdoc at University of Sheffield
Thomas Källman, PhD student and postdoc, currently bioinformatician at the Museum of Natural History, Stockholm.
Karl Holm, PhD student and postdoc, currently Lecturer at the Independent Learning Centre, The Chinese University of Hong Kong , Hong Kong.
Sofia Hemmilä, PhD student, currently course coordinator at Uppsala University
Tanja Slotte, PhD student, currently Associate Professor at Stockholm University
Padraic Corcoran, MsC, currently postdoc at University of Sheffield.
Per Sjödin, PhD student, currently Researcher in Mattias Jakobsson’s group at EBC
Johan Fogelqvist, PhD student, currently Researcher at the Swedish University of Agricultural Sciences
Marita Kruskopf-Österberg, PhD student, currently Manager at INC Research, Uppsala.
Lars Berg, PhD student, currently at the Stockholm Resilience Centre
Anna Palmé, PhD student and postdoc, currently Senior Scientist at Nordic Genetic Resource Centre (NordGen)
Hanna Larsson, PhD student, currently teacher in Uppsala
Vladimir Semerikov, Postdoc, currently researcher, Russian Academy of Sciences, Yekaterinburg, Russia
Alf Ceplitis, Postdoc, currently oat breeder with Lanmtmännen, Sweden
Laura Parducci, Postdoc, currently Assistant professor Uppsala University
Niclas Gyllenstrand, Postdoc, currently Lab head, Museum of Natural History, Stockholm
Myriam Heuertz, Postdoc, currently Chargé de recherches, INRA-Bordeaux, France
Susanne Gustafsson, Postdoc, currently at Swedish University of Agricultural Sciences
Ma Xiao-Fei, Postdoc, currently PI, Chinese Academy of Sciences, Lanzhou, PRC
Yoshiaki Tsuda, Postdoc, currently Assistant Professor, Sugadaira Montane Research Center University of Tsukuba, Japan