Duan T., Sicard A., Glémin S., Lascoux M. (2024) Separating phases of allopolyploid evolution with resynthesized and natural Capsella bursa-pastoris. eLife 12, RP88398
2023
James J , Kastally C ,Budde KB , González-Martínez SC , Milesi P , Pyhäjärvi T , GenTree Consortium, Lascoux M (2023) Between but not within species variation in the Distribution of Fitness Effects. Mol. Biol. Evol. 40 (11), msad228
Duan T., Sicard A., Glémin S., Lascoux M. (2023) Expression pattern of resynthesized allotetraploid Capsella is determined by hybridization, not whole genome duplication. New Phytologist 237: 339-353
Tiret, M., Olssson L., Grahn T., Karlsson B., Milesi P., Lascoux M., Lundqvist S-O., Garcia-Gil, M.R. (2023) Divergent selection predating the Last Glacial Maximum mainly acted on macro-phenotypes in Norway spruce. Evol. Applications 16 (1), 163-172
Leal J.L., Milesi P., Salojärvi J., and M. Lascoux (2023) Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences. Systematic Biology syad009.
2022
Zhang, Z; Kryvokhyzha, D; Orsucci, M; Glemin, S; Milesi, P; Lascoux, M (2022) How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus. New Phytologist 236: 2344-2357
Li, L, Milesi, P, Tiret, M, Chen, J, Sendrowski, J, Baison, J, Chen, Z-Q, Zhou, L, Karlsson, B, Berlin, M, Westin, J, Garcia-Gil, MR, Wu, H, Lascoux, M (2022) Teasing apart the joint effect of demography and natural selection in the birth of a contact zone. New Phytologist 236: 1976-1987
Ament-Velásquez L, Vogan AA, Granger-Farbos A, Bastiaans E, Martinossi-Allibert I, Saupe SJ, de Groot S, Lascoux M, Debets AJM, Clavé C, Johannesson H (2022) Allorecognition genes drive reproductive isolation in Podospora anserina. Nature Ecology and Evolution 6:910-923.
Orsucci M, Yang X, Vanikiotis T, Guerrina M, Duan T, Lascoux M, Glémin S (2022) Competitive ability depends on mating system and ploidy level across Capsella species. Annals of Botany 129: 697–708.
Fu R , Zhu Y, Liu Y, FengY , Lu R-S , Li Y , Li P, Kremer A , Lascoux M, Chen J. (2022) Genome-wide analyses of introgression between two sympatric Asian oak species. Nature Ecology and Evolution 6:924–935
Cornille A., Tiret, M. Salcedo A., Huang H., Kryvokhyzha D., Orsucci M., Milesi P., Holm K. , Ge, X-J., Stinchcombe J.R., Glémin S., Wright S.I., Lascoux M (2022) Performance and plasticity of a cosmopolitan weed: a common garden experiment in Asia and Europe. Annals of Botany Plants 14: 1–13
Saleh D, Chen J, Leplé JC, Leroy T, Truffaut L, Dencausse B, Lalanne C, Labadie K, Lesur I, Bert D, Lagane F, Morneau F, Aury JM, Plomion C, Lascoux M, Kremer A. (2022) Genome-wide evolutionary response of European oaks during the Anthropocene. Evolution Letters 6: 4-20.
Chen J, Bataillon T, Glémin S, Lascoux M. (2022) What does the Distribution of Fitness Effects of new mutations (DFE) reflect? Insights from plants. New Phytologist 233 (4), 1613-1619
Jun Chen, Thomas Bataillon, Sylvain Glémin and Martin Lascoux. (2022) Hunting for beneficial mutations: conditioning on SIFT scores when estimating the Distribution of Fitness Effect of new mutations. Genome Biology and Evolution 14 (1), evab151
2021
Chen ZQ; Zan Y; Milesi P; Zhou L; Chen J; Li L; Cui BB; Niu S; Westin J; Karlsson B; García-Gil MR; Lascoux M; Wu H (2021) Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis. Genome Biology 22:179.
Svedberg J, Vogan AA, Rhoades NA, Sarmarajeewa D, Jacobson DJ, Lascoux M, Hammond TM, Johannesson H. 2021. An introgressed gene causes meiotic drive in Neurospora sitophila. Proc National Acad Sci 118, e2026605118.
Kaj I, Glémin S, Tahir D, Lascoux M. 2021. Analysis of diversity-dependent species evolution using concepts in population genetics. Journal of Mathematical Biology 82: 22.
Benavides R, Carvalho B, Bastias CC, López‐Quiroga D, Mas A, Cavers S, Gray A, Albet A, Alía R, Ambrosio O, et al. 2021. The GenTree Leaf Collection: Inter‐ and intraspecific leaf variation in seven forest tree species in Europe. Global Ecology and Biogeography 30: 590–597.
Opgenoorth L, Dauphin B, Benavides R, Heer K, Alizoti P, Martínez-Sancho E, Alía R, Ambrosio O, Audrey A, Auñón F, et al. 2021. The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species. GigaScience 10.
2020
Genomic insights on the contribution of balancing selection and local adaptation to the long-term survival of a widespread living fossil tree, Cercidiphyllum japonicum. Shanshan Zhu, Jun Chen, Jing Zhao, Pan Li, Hans Peter Comes, Chengxin Fu, Xiao Xie, Ruisen Lu, Wuqin Xu, Yu Feng, Wenqing Ye, Shota Sakaguchi, Yuji Isagi, Linfeng Li, Martin Lascoux, Yingxiong Qiu. New Phytologist 228: 1674–1689..
Cytoplasmic DNA variation does not support a recent contribution of Pinus sylvestris L. from the Caucasus to the main range. Semerikov NV, Petrova IV, Sannikov SN, Semerikova SA, Tashev AN, Lascoux M, Semerikov VL. Tree genetics and genomes 16:59.
Ecological strategy and genetic load in the shepherd’s purse (Capsella bursa-pastoris) from the core and the limit of its natural range. Marion Orsucci, Pascal Milesi, Johanna Hansen, Johanna Girodolle, Sylvain Glemin, Martin Lascoux. Proc. R. Soc. B 287: 20200463.
Survival despite isolation, inbreeding and asexual reproduction in the Tropics: insights from the genome of the world’s southernmost poplar (Populus ilicifolia). Zeyuan Chen, Fandi Ai, Junlin Zhang, Xinzhi Ma, Wenlu Yang, Weiwei Wang, Yutao Su, Mingcheng Wang, Yongzhi Yang, Kangshan Mao, Qingfeng Wang, Martin Lascoux, Jianquan Liu, Tao Ma. The Plant Journal 103: 430–442 .
From drift to draft: How much do beneficial mutations actually contribute to predictions of Ohta’s slightly deleterious model of molecular evolution? Jun Chen, Sylvain Glémin and Martin Lascoux. Genetics 214:1005-1018..
Clinal variation in growth cessation and FTL2 expression in Siberian spruce. Lili Li, Jun Chen, Martin Lascoux. Tree Genetics and Genomes 15:82.
2019
Modeling trait-dependent evolution on a random species tree. Tahir D, Glémin S, Lascoux M, Kaj I (2019) Journal of Theoretical Biology 461: 189-203.
Parental legacy, demography, and admixture influenced the evolution of the two subgenomes of the tetraploid Capsella bursa-pastoris (Brassicaceae). Kryvokhyzha D, Salcedo A, Eriksson MC, Duan T, Tawari N, Chen J, Guerrina M, Kreiner JM, Kent TV, Lagercrantz U, Stinchcombe JR, Glémin S, Wright SI, Lascoux M (2019) PloS Genetics 15(2) e1007949
Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris). Dmytro Kryvokhyzha, Pascal Milesi, Tianlin Duan, Marion Orsucci, Stephen I. Wright, Sylvain Glémin, Martin Lascoux. bioRxiv 479048; doi:https://doi.org/10.1101/479048. PLoS Genetics 15(5): e1008131
Genomic data provides new insights on the demographic history and the extent of recent material transfers in Norway spruce. Jun Chen, Lili Li, Pascal Milesi, Gunnar Jansson, Mats Berlin, Bo Karlsson, Jelena Aleksic, Giovanni G Vendramin, Martin Lascoux. Evol. Applications 12:1539–1551.
Assessing the potential for assisted gene flow using past introduction of Norway spruce in Southern Sweden: Local adaptation and genetic basis of quantitative traits in trees. Pascal Milesi, Mats Berlin, Jun Chen, Marion Orsucci, LiLi Li, Gunnar Jansson, Bo Karlsson, Martin Lascoux. Evol. Appl. 12:1946–1959.
2018
Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements. Jesper Svedberg, Sara Hosseini, Jun Chen, Aaron A. Vogan, Iva Mozgova, Lars Hennig, Pennapa Manitchotpisit, Anna Abusharekh, Thomas M. Hammond, Martin Lascoux, Hanna Johannesson 2018. Nature Communications 9(1):4242
Homeologue-specific expression divergence in the recently formed tetraploid Capsella bursa-pastoris (Brassicaceae). Huang, HR; Liu, J-J; Xu, Y; Lascoux, M; Ge, X-J; Wright, SI. 2018. New Phytologist 220:624-635.
Paternally expressed imprinted genes associate with hybridization barriers in Capsella. Lafon-Placette C, Hatorangan MR, Steige KA, Cornille A, Lascoux M, Slotte T, Köhler C. 2018. Nature Plants, 4(6):352-357.
Oak genome reveals facets of long lifespan. C. Plomion, JM Aury , J Amselem , T Leroy , F Murat , S Duplessis , S Faye , N Francillonne , K Labadie , G Le Provost , I Lesur , J Bartholomé , P Faivre-Rampant , A Kohler , J-C Leplé , N Chantret , J Chen , A Diévart , T Alaeitabar , V Barbe , C Belser , H Bergès , C Bodénès , M-B Bogeat-Triboulot , M-L Bouffaud , B Brachi , D Cohen , A Couloux , C Da Silva , C Dossat , F Ehrenmann , C Gaspin , J Grima-Pettenati , E Guichoux , A Hecker , S Herrmann , P Hugueney , I Hummel , C Klopp , C Lalanne , M Lascoux , E Lasserre , A Lemainque , M-L Desprez-Loustau , I Luyten , M-A Madoui , S Mangenot , C Marchal , F Maumus , J Mercier , C Michotey , O Panaud, N Picault , N Rouhier , O Rué , C Rustenholz , F Salin , M Soler , M Tarkka , A Velt , A Zanne , F Martin , PWincker , H Quesneville , A Kremer , J Salse (2018) Nature Plants 4(7):440-452.
Demographic expansion and genetic load of the halophyte model plant Eutrema salsugineum.Wang XJ, Hu QJ, Guo XY, Wang K, Ru DF, German D, Weretilnyk EA, Abbott RJ, Lascoux M , Liu JQ. 2018. Molecular Ecology 27(14):2943-2955.
Competitive ability of Capsella species with different mating systems and ploidy levels. Petrone Mendoza S., Lascoux M., Glémin S. (2018) Annals of Botany 121:1257-1264.
From America to Eurasia: a multigenomes history of the genus Abies. Svetlana Semerikova, Yuliya Khrunyk, Martin Lascoux, Vladimir Semerikov 2018. Molecular Phylogenetics and Evolution125:14-28.
2017
Ancient polymorphisms and divergence hitchhiking contribute to genomic islands of divergence within a poplar species complex. Ma, T., Wang, K., Hu, Q., Xi, Z., Wan, D., Wang, Q., et al. (2017). Proceedings of the National Academy of Sciences, 115:E236-E243.
Inferring Demographic History Using Genomic Data. Jordi Salmona, Rasmus Heller, Martin Lascoux and Aaron Shafer (2017) in Om P. Rajora (ed.), Population Genomics: Concepts, Approaches and Applications, DOI 10.1007/13836_2017_1, Springer International Publishing AG 2017.
Using the Ornstein-Uhlenbeck process to model the evolution of interacting populations. Bartoszek, K; Glémin, S; Kaj, I, Lascoux, M. (2017) J. of Theoretical Biology, 429: 35-45 .
Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch. Jarkko Salojärvi, [79 authors], Martin Lascoux, Victor A Albert, Petri Auvinen, Ykä Helariutta & Jaakko Kangasjärvi. Nature Genetics. 49:904-912. doi:10.1038/ng.3862